I ran into an issue where agent was not uploading the xmls to the OMS server. emctl upload fails with the error "EMD upload error: uploadXMLFiles skipped :: OMS version not checked yet..."
To resolve the issue try the following.
Check if the host is able to communicate with the OMS by using telnet as mentioned below. If you punch in "^]" escape sequence, you will receive Apache version that OMS is running currently on the port 4890.
$ telnet testsrvoms.msudhan.com 4890
Trying xx.xx.xx.xx...
Connected to testsrvoms.msudhan.com.
Escape character is '^]'.
^]
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$ emctl secure agent agent
Oracle Enterprise Manager 10g Release 10.2.0.2.0.
Copyright (c) 1996, 2006 Oracle Corporation. All rights reserved.
Agent successfully stopped... Done.
Securing agent... Started.
Requesting an HTTPS Upload URL from the OMS... Done.
Requesting an Oracle Wallet and Agent Key from the OMS... Done.
Check if HTTPS Upload URL is accessible from the agent... Done.
Configuring Agent for HTTPS in CENTRAL_AGENT mode... Done.
EMD_URL set in /agent10g/agent10g/sysman/config/emd.properties
Securing agent... Successful.
Agent successfully restarted... Done.
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